[Resource container(s) spawned by factory don't fill]

Any resource container won't work if it's been spawned by a Factory, unless a collector is spawned with the same factory. Non-spawned collectors won't hook into the newly spawned containers.

[Loot boxes / Caches are flagged as Terrain]

When dropping one of the crates off at the resource pod, one of the found boxes pass through a sensor for detecting terrain, and set it off (sadly destroying my drone, as it was hooked up to an undeployed bomb).